If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ), 'gf_id' => 'HOM05D000992', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000992' ), 'data_identifier' => 'HOM05D000992', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000992', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '608', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p32000' => 'bna', 'A04p07190' => 'bna', 'A05p38300' => 'bna', 'A06p44420' => 'bna', 'A09p45230' => 'bna', 'A09p45250' => 'bna', 'Aa31LG10G7270' => 'aar', 'Aa31LG10G7290' => 'aar', 'Aa31LG2G8460' => 'aar', 'Aa31LG3G4210' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3128' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3805' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2075' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2087' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.2084' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.355' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1223' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.542' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1987' => 'aag', 'Actinidia04063' => 'ach', 'Actinidia04656' => 'ach', 'Actinidia04657' => 'ach', 'Actinidia06712' => 'ach', 'Actinidia06713' => 'ach', 'Actinidia18442' => 'ach', 'Actinidia18559' => 'ach', 'Actinidia18560' => 'ach', 'Actinidia21346' => 'ach', 'Actinidia29748' => 'ach', 'Actinidia31614' => 'ach', 'Actinidia33881' => 'ach', 'Ah.05g177390' => 'amhyb', 'Ah.14g086360' => 'amhyb', 'Ah.16g104220' => 'amhyb', 'AL3G22480' => 'aly', 'AL5G10450' => 'aly', 'AL5G32760' => 'aly', 'AL5G32770' => 'aly', 'Aqoxy1G01026' => 'aox', 'Aqoxy1G01031' => 'aox', 'Aqoxy4G02356' => 'aox', 'Aqoxy4G02359' => 'aox', 'Aqoxy7G00061' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1FQ4J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5WQ1I2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.680Z4Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DB9NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.98V0PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AK16BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B62L7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD6N9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F8MW8X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FYKT6P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1CRI5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H1DY4G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPCF80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J2MVK8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LLNI73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M78ZSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZBU3F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5NZWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9I49P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W85QNY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WFM9CG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XRZ9I4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEKP0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4W0L1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZD1VES' => 'arhy', 'AT2G01470' => 'ath', 'AT3G10940' => 'ath', 'AT3G52180' => 'ath', 'AT3G52190' => 'ath', 'AT3G52526' => 'ath', 'AT5G50550' => 'ath', 'AT5G50650' => 'ath', 'ATR0579G172' => 'atr', 'ATR0665G575' => 'atr', 'ATR0681G113' => 'atr', 'ATR0723G004' => 'atr', 'Atru.chr11.373' => 'acertr', 'Atru.chr12.156' => 'acertr', 'Atru.chr12.923' => 'acertr', 'Atru.chr12.925' => 'acertr', 'AUR62002704' => 'cqu', 'AUR62002705' => 'cqu', 'AUR62003431' => 'cqu', 'AUR62012357' => 'cqu', 'AUR62023333' => 'cqu', 'AUR62030163' => 'cqu', 'AUR62030165' => 'cqu', 'AUR62038000' => 'cqu', 'BcaB02g08584' => 'bca', 'BcaB02g11084' => 'bca', 'BcaB05g23416' => 'bca', 'BcaB06g25664' => 'bca', 'BcaB07g30396' => 'bca', 'BcaC02g09273' => 'bca', 'BcaC03g17042' => 'bca', 'BcaC05g29413' => 'bca', 'BcaC06g31305' => 'bca', 'BcaC06g34175' => 'bca', 'BcaC07g39588' => 'bca', 'BolC2t11036H' => 'bol', 'BolC4t25658H' => 'bol', 'BolC4t25659H' => 'bol', 'BolC5t34374H' => 'bol', 'BolC7t43735H' => 'bol', 'BolC8t50360H' => 'bol', 'BolC8t50361H' => 'bol', 'BraA02t08211Z' => 'bra', 'BraA04t16415Z' => 'bra', 'BraA05t22621Z' => 'bra', 'BraA06t27316Z' => 'bra', 'BraA09t39985Z' => 'bra', 'BraA09t39987Z' => 'bra', 'BraA09t39988Z' => 'bra', 'C02p49570' => 'bna', 'C04p40750' => 'bna', 'C07p31890' => 'bna', 'C08p27430' => 'bna', 'CAN.G135.32' => 'can', 'CAN.G135.42' => 'can', 'CAN.G287.5' => 'can', 'CANSAT56G0793' => 'cansat', 'CANSAT56G1783' => 'cansat', 'CANSAT56G3856' => 'cansat', 'CANSAT64G2027' => 'cansat', 'CARHR085520' => 'chi', 'CARHR143990' => 'chi', 'CARHR161940' => 'chi', 'CARHR161950' => 'chi', 'CARHR257330' => 'chi', 'Carub.0003s1021' => 'cru', 'Carub.0005s0043' => 'cru', 'Carub.0005s1854' => 'cru', 'Carub.0005s1855' => 'cru', 'Ca_10463_v3' => 'car', 'Ca_10464_v3' => 'car', 'Ca_16882_v3' => 'car', 'Ca_18738_v3' => 'car', 'Ca_30875_v3' => 'car', 'Cc02_g05540' => 'ccan', 'Cc02_g10430' => 'ccan', 'Cc02_g10470' => 'ccan', 'Cc11_g08530' => 'ccan', 'CDE02G4261' => 'cde', 'CDE06G0455' => 'cde', 'CDE08G1463' => 'cde', 'Cfa001224' => 'cfa', 'Cfa001767' => 'cfa', 'Cfa008618' => 'cfa', 'Cfa011196' => 'cfa', 'Ciclev10015444m.g' => 'ccl', 'Ciclev10031766m.g' => 'ccl', 'Ciclev10031853m.g' => 'ccl', 'Ciclev10032289m.g' => 'ccl', 'CiPaw.01G264400' => 'cil', 'CiPaw.02G169600' => 'cil', 'CiPaw.02G198200' => 'cil', 'CiPaw.05G250700' => 'cil', 'CiPaw.06G011200' => 'cil', 'CiPaw.13G034500' => 'cil', 'CiPaw.15G119400' => 'cil', 'ClCG05G021480' => 'cla', 'ClCG07G004860' => 'cla', 'ClCG08G007980' => 'cla', 'ClCG11G001240' => 'cla', 'COL.COLO4_07701' => 'col', 'COL.COLO4_08797' => 'col', 'COL.COLO4_10041' => 'col', 'COL.COLO4_13161' => 'col', 'Cpa.g.sc128.69' => 'cpa', 'Cpa.g.sc128.70' => 'cpa', 'Cpa.g.sc19.85' => 'cpa', 'Cpa.g.sc65.151' => 'cpa', 'Cpa.g.sc65.153' => 'cpa', 'Cre03.g151000' => 'cre', 'Cre03.g170350' => 'cre', 'Cre09.g403050' => 'cre', 'CsaV3_2G032800' => 'csa', 'CsaV3_5G010760' => 'csa', 'CsaV3_5G013310' => 'csa', 'CsaV3_5G035770' => 'csa', 'CSS0005473' => 'camsi', 'CSS0006166' => 'camsi', 'CSS0009070' => 'camsi', 'CSS0013481' => 'camsi', 'CSS0015621' => 'camsi', 'CSS0018449' => 'camsi', 'CSS0020582' => 'camsi', 'CSS0024236' => 'camsi', 'CSS0034951' => 'camsi', 'CSS0037059' => 'camsi', 'CSS0038996' => 'camsi', 'CSS0042156' => 'camsi', 'CSS0042707' => 'camsi', 'DCAR_000389' => 'dca', 'DCAR_006381' => 'dca', 'DCAR_007301' => 'dca', 'DCAR_014589' => 'dca', 'DCAR_019051' => 'dca', 'DCAR_019053' => 'dca', 'DCAR_022304' => 'dca', 'DCAR_030227' => 'dca', 'Dinv10545' => 'din', 'Dinv14423' => 'din', 'Dinv26061' => 'din', 'Dinv31271' => 'din', 'Dinv31274' => 'din', 'Duzib114G0221' => 'dzi', 'Duzib114G0533' => 'dzi', 'Duzib114G0893' => 'dzi', 'Duzib128G0113' => 'dzi', 'Duzib128G0880' => 'dzi', 'Duzib174G0004' => 'dzi', 'Duzib248G0828' => 'dzi', 'Duzib251G0427' => 'dzi', 'ECA232G2145' => 'eca', 'ECA232G2846' => 'eca', 'ECA238G4076' => 'eca', 'ECA238G4096' => 'eca', 'ECA247G3162' => 'eca', 'EL10Ac1g00687' => 'bvu', 'EL10Ac2g04257' => 'bvu', 'EL10Ac8g19649' => 'bvu', 'EL10Ac8g19650' => 'bvu', 'Eucgr.G02182' => 'egr', 'Eucgr.G02726' => 'egr', 'Eucgr.G02727' => 'egr', 'Eucgr.J00133' => 'egr', 'Eucgr.J01031' => 'egr', 'FAN01G0397' => 'fan', 'FAN01G0977' => 'fan', 'FAN03G0142' => 'fan', 'FAN03G0257' => 'fan', 'FAN03G3495' => 'fan', 'FAN06G0927' => 'fan', 'FAN06G1948' => 'fan', 'FAN06G2553' => 'fan', 'FAN07G2064' => 'fan', 'FAN10G0326' => 'fan', 'FAN10G1773' => 'fan', 'FAN10G2691' => 'fan', 'FAN10G3684' => 'fan', 'FAN10G4244' => 'fan', 'FAN12G1857' => 'fan', 'FAN17G2843' => 'fan', 'FAN22G0786' => 'fan', 'FvH4_4g32580' => 'fve', 'FvH4_7g06850' => 'fve', 'FvH4_7g06890' => 'fve', 'FvH4_7g25650' => 'fve', 'Glyma.04G220900' => 'gma', 'Glyma.06G145000' => 'gma', 'Glyma.07G218700' => 'gma', 'Glyma.10G200100' => 'gma', 'Glyma.10G200200' => 'gma', 'Glyma.20G190300' => 'gma', 'Glyma.20G190400' => 'gma', 'Gohir.A01G129000' => 'ghi', 'Gohir.A05G279266' => 'ghi', 'Gohir.A05G279332' => 'ghi', 'Gohir.A05G393800' => 'ghi', 'Gohir.A07G097700' => 'ghi', 'Gohir.D01G118600' => 'ghi', 'Gohir.D04G021000' => 'ghi', 'Gohir.D05G280900' => 'ghi', 'Gohir.D07G102000' => 'ghi', 'Gorai.001G109900' => 'gra', 'Gorai.002G144700' => 'gra', 'Gorai.009G294300' => 'gra', 'Gorai.012G025200' => 'gra', 'GSVIVG01005023001' => 'vvi', 'GSVIVG01011745001' => 'vvi', 'GSVIVG01032705001' => 'vvi', 'GSVIVG01034664001' => 'vvi', 'HanXRQChr02g0044681' => 'han', 'HanXRQChr09g0247401' => 'han', 'HanXRQChr11g0320951' => 'han', 'HanXRQChr12g0377541' => 'han', 'HanXRQChr14g0456211' => 'han', 'HanXRQChr14g0456231' => 'han', 'Haze_02650' => 'cav', 'Haze_10992' => 'cav', 'Haze_16788' => 'cav', 'Haze_17338' => 'cav', 'Hma1.2p1_0670F.1_g200425' => 'hma', 'Hma1.2p1_1275F.1_g271990' => 'hma', 'Hma1.2p1_1275F.1_g272030' => 'hma', 'Hma1.2p1_1346F.1_g277200' => 'hma', 'Hma1.2p1_1764F.1_g301400' => 'hma', 'Hma1.2p1_2148F.1_g315130' => 'hma', 'Hma1.2p1_3119F.1_g332850' => 'hma', 'HPP92_015172' => 'vpl', 'HPP92_018839' => 'vpl', 'HPP92_018872' => 'vpl', 'HPP92_027233' => 'vpl', 'Hund13465' => 'sun', 'Hund17156' => 'sun', 'Hund17787' => 'sun', 'Hund17857' => 'sun', 'Lalb_Chr02g0151201' => 'lal', 'Lalb_Chr05g0219541' => 'lal', 'Lalb_Chr06g0170071' => 'lal', 'Lalb_Chr08g0238991' => 'lal', 'Lalb_Chr16g0385011' => 'lal', 'Lalb_Chr21g0313101' => 'lal', 'Lj1A965T43' => 'lonja', 'Lj1g0027937' => 'lja', 'Lj2C25G14' => 'lonja', 'Lj3A934G28' => 'lonja', 'Lj4g0026372' => 'lja', 'Lj5g0009531' => 'lja', 'Lj5g0010526' => 'lja', 'Lj5g0011693' => 'lja', 'Lsat_1_v5_gn_1_4261' => 'lsa', 'Lsat_1_v5_gn_2_103021' => 'lsa', 'Lsat_1_v5_gn_2_103080' => 'lsa', 'Lsat_1_v5_gn_2_125321' => 'lsa', 'Lsat_1_v5_gn_9_43601' => 'lsa', 'Lsat_1_v5_gn_9_71060' => 'lsa', 'Manes.06G021000' => 'mes', 'Manes.10G005000' => 'mes', 'Manes.10G053500' => 'mes', 'Manes.10G053800' => 'mes', 'Manes.15G128400' => 'mes', 'Manes.17G077900' => 'mes', 'Mapoly0001s0455' => 'mpo', 'Mapoly0009s0085' => 'mpo', 'Mapoly0068s0040' => 'mpo', 'MBI01_g07181_MAGBIO' => 'mbi', 'MBI01_g15709_MAGBIO' => 'mbi', 'MBI01_g19098_MAGBIO' => 'mbi', 'MBI01_g24895_MAGBIO' => 'mbi', 'MBI01_g31368_MAGBIO' => 'mbi', 'MBI02_g05876_MAGBIO' => 'mbi', 'MBI03_g38978_MAGBIO' => 'mbi', 'MBI03_g38980_MAGBIO' => 'mbi', 'MBI04_g06597_MAGBIO' => 'mbi', 'MBI04_g44511_MAGBIO' => 'mbi', 'MBI05_g08207_MAGBIO' => 'mbi', 'MBI07_g16892_MAGBIO' => 'mbi', 'MBI07_g21054_MAGBIO' => 'mbi', 'MBI07_g28641_MAGBIO' => 'mbi', 'MBI07_g32656_MAGBIO' => 'mbi', 'MBI09_g12446_MAGBIO' => 'mbi', 'MBI09_g42526_MAGBIO' => 'mbi', 'MBI10_g18303_MAGBIO' => 'mbi', 'MBI11_g30565_MAGBIO' => 'mbi', 'MBI11_g32525_MAGBIO' => 'mbi', 'MBI12_g41796_MAGBIO' => 'mbi', 'MBI13_g11344_MAGBIO' => 'mbi', 'MBI13_g15012_MAGBIO' => 'mbi', 'MBI14_g11049_MAGBIO' => 'mbi', 'MBI14_g15691_MAGBIO' => 'mbi', 'MBI14_g15777_MAGBIO' => 'mbi', 'MBI14_g20577_MAGBIO' => 'mbi', 'MBI16_g37742_MAGBIO' => 'mbi', 'MBI17_g06172_MAGBIO' => 'mbi', 'MBI17_g06174_MAGBIO' => 'mbi', 'MBI18_g16962_MAGBIO' => 'mbi', 'MBI18_g39507_MAGBIO' => 'mbi', 'MBI19_g00862_MAGBIO' => 'mbi', 'MBI19_g01434_MAGBIO' => 'mbi', 'MCO03G131' => 'mco', 'MCO05G247' => 'mco', 'MCO06G215' => 'mco', 'MD01G1038900' => 'mdo', 'MD01G1039000' => 'mdo', 'MD01G1164000' => 'mdo', 'MD02G1241000' => 'mdo', 'MD07G1075600' => 'mdo', 'MD07G1231700' => 'mdo', 'MD08G1204700' => 'mdo', 'MD13G1024400' => 'mdo', 'MD15G1312700' => 'mdo', 'MD16G1027100' => 'mdo', 'Medtr1g090867' => 'mtr', 'Medtr1g090873' => 'mtr', 'Medtr3g094300' => 'mtr', 'Medtr4g084650' => 'mtr', 'MELO3C012378.2' => 'cme', 'MELO3C019856.2' => 'cme', 'MELO3C020114.2' => 'cme', 'Migut.E00433' => 'egut', 'Migut.F00592' => 'egut', 'Migut.F01890' => 'egut', 'Migut.F01891' => 'egut', 'MSTRG.27509' => 'ama', 'MSTRG.8899' => 'ama', 'MSTRG.9121' => 'ama', 'MSTRG.9122' => 'ama', 'Nitab4.5_0000109g0480' => 'nta', 'Nitab4.5_0000441g0190' => 'nta', 'Nitab4.5_0000593g0260' => 'nta', 'Nitab4.5_0000593g0310' => 'nta', 'Nitab4.5_0006383g0030' => 'nta', 'Nitab4.5_0007241g0010' => 'nta', 'Nitab4.5_0007845g0030' => 'nta', 'Nitab4.5_0012197g0010' => 'nta', 'Nn2g13910' => 'nnu', 'Nn4g24190' => 'nnu', 'Nn5g26884' => 'nnu', 'Nn6g35156' => 'nnu', 'Nn6g35160' => 'nnu', 'Oeu003380.1' => 'oeu', 'Oeu005277.1' => 'oeu', 'Oeu025422.1' => 'oeu', 'Oeu032436.1' => 'oeu', 'Oeu032437.1' => 'oeu', 'Oeu033441.1' => 'oeu', 'Oeu054427.1' => 'oeu', 'Oeu059830.1' => 'oeu', 'Oeu059837.1' => 'oeu', 'Oeu059838.1' => 'oeu', 'Os03g0107800' => 'osa', 'Os03g0799900' => 'osa', 'Os07g0187700' => 'osa', 'Os11g0113100' => 'osa', 'Os11g0610700' => 'osa', 'Os12g0112500' => 'osa', 'Peaxi162Scf00276g00614' => 'pax', 'Peaxi162Scf00276g00615' => 'pax', 'Peaxi162Scf00276g00618' => 'pax', 'Peaxi162Scf00321g00008' => 'pax', 'Peaxi162Scf00321g00215' => 'pax', 'Peaxi162Scf00739g00012' => 'pax', 'Peaxi162Scf00776g00324' => 'pax', 'PGR044G1417' => 'pgr', 'PGR119G0308' => 'pgr', 'PGR142G0912' => 'pgr', 'PGR142G4158' => 'pgr', 'PGSC0003DMG400006156' => 'stu', 'PGSC0003DMG400015246' => 'stu', 'PGSC0003DMG400019005' => 'stu', 'PGSC0003DMG400019108' => 'stu', 'PGSC0003DMG400027327' => 'stu', 'PGSC0003DMG400029073' => 'stu', 'PGSC0003DMG402027324' => 'stu', 'PGSC0003DMG404027324' => 'stu', 'Phvul.002G095100' => 'pvu', 'Phvul.007G144900' => 'pvu', 'Phvul.007G145000' => 'pvu', 'Phvul.009G141000' => 'pvu', 'Potri.008G029200' => 'ptr', 'Potri.008G029300' => 'ptr', 'Potri.008G130300' => 'ptr', 'Potri.010G111800' => 'ptr', 'Potri.010G232200' => 'ptr', 'Potri.010G232400' => 'ptr', 'Potri.019G048600' => 'ptr', 'Pp3c11_24300' => 'ppa', 'Pp3c13_12620' => 'ppa', 'Pp3c16_260' => 'ppa', 'Pp3c21_8000' => 'ppa', 'Pp3c22_1410' => 'ppa', 'Pp3c3_15480' => 'ppa', 'Pp3c6_19150' => 'ppa', 'Pp3c7_1040' => 'ppa', 'PRCOL_00000216' => 'pco', 'PRCOL_00003275' => 'pco', 'PRCOL_00003322' => 'pco', 'PRCOL_00006344' => 'pco', 'Prupe.1G326100' => 'ppe', 'Prupe.2G096100' => 'ppe', 'Prupe.2G096500' => 'ppe', 'Prupe.2G261800' => 'ppe', 'Psat5g067720' => 'psa', 'Psat6g174120' => 'psa', 'Psat6g174200' => 'psa', 'Psat7g126720' => 'psa', 'PSO017G1088' => 'pso', 'PSO017G5972' => 'pso', 'PSO063G1483' => 'pso', 'PSO063G5536' => 'pso', 'PSO063G7085' => 'pso', 'PSO170G1320' => 'pso', 'PSO339G0066' => 'pso', 'PSO339G4494' => 'pso', 'PSO478G1659' => 'pso', 'PSO782G4161' => 'pso', 'QL01p001467' => 'qlo', 'QL02p040832' => 'qlo', 'QL04p040209' => 'qlo', 'QL08p052900' => 'qlo', 'QL08p064570' => 'qlo', 'QL11p050299' => 'qlo', 'QL11p050316' => 'qlo', 'QL11p050342' => 'qlo', 'RcHm_v2.0_Chr1g0336591' => 'rch', 'RcHm_v2.0_Chr1g0336681' => 'rch', 'RcHm_v2.0_Chr1g0336701' => 'rch', 'RcHm_v2.0_Chr1g0336731' => 'rch', 'RcHm_v2.0_Chr1g0371831' => 'rch', 'RcHm_v2.0_Chr4g0441451' => 'rch', 'Rhsim03G0110600' => 'rsi', 'Rhsim03G0110700' => 'rsi', 'Rhsim03G0150700' => 'rsi', 'Rhsim03G0184600' => 'rsi', 'Rhsim03G0185500' => 'rsi', 'Rhsim03G0186000' => 'rsi', 'Rhsim06G0241000' => 'rsi', 'Sabra08G0019500' => 'sbr', 'Sabra08G0098900' => 'sbr', 'Sabra10G0082200' => 'sbr', 'Sabra10G0179900' => 'sbr', 'Sabra10G0180200' => 'sbr', 'Sabra19G0058200' => 'sbr', 'SalBow1G5429' => 'sbo', 'SalBow3G4330' => 'sbo', 'SalBow4G0596' => 'sbo', 'SalBow4G3094' => 'sbo', 'SalBow7G0291' => 'sbo', 'SalBow8G2514' => 'sbo', 'Sc09g0005820' => 'sci', 'Sc09g0005830' => 'sci', 'Sc10g0002910' => 'sci', 'Sc10g0008370' => 'sci', 'Sc10g0008380' => 'sci', 'Sc20g0001420' => 'sci', 'Sed0001799' => 'sed', 'Sed0004636' => 'sed', 'Sed0004652' => 'sed', 'Sed0016850' => 'sed', 'Sed0025111' => 'sed', 'SEGI_13483' => 'sgi', 'SEGI_13998' => 'sgi', 'SEGI_21673' => 'sgi', 'SEGI_24192' => 'sgi', 'SEGI_28359' => 'sgi', 'SEGI_30230' => 'sgi', 'SEGI_34527' => 'sgi', 'SGA_v2.0_scaffold257G45690' => 'sas', 'SGA_v2.0_scaffold257G45692' => 'sas', 'SGA_v2.0_scaffold39G15183' => 'sas', 'SGA_v2.0_scaffold44G16644' => 'sas', 'SGA_v2.0_scaffold62G21359' => 'sas', 'SGA_v2.0_scaffold62G21360' => 'sas', 'SHI03261' => 'shi', 'SMO116G0272' => 'smo', 'SMO119G0347' => 'smo', 'SMO144G0188' => 'smo', 'SMO174G0232' => 'smo', 'SMO228G0107' => 'smo', 'Solyc03g111160.3' => 'sly', 'Solyc06g050230.4' => 'sly', 'Solyc07g047970.4' => 'sly', 'Solyc11g007780.2' => 'sly', 'Solyc11g007825.1' => 'sly', 'Solyc11g007830.2' => 'sly', 'Sopen03g030310' => 'spe', 'Sopen06g015730' => 'spe', 'Sopen07g024400' => 'spe', 'Sopen11g003640' => 'spe', 'Sopen11g003690' => 'spe', 'Sp2g12920' => 'spa', 'Sp3g09270' => 'spa', 'Sp5g10080' => 'spa', 'Sp5g10090' => 'spa', 'TAR369G0972' => 'tar', 'TAR371G0875' => 'tar', 'TAR623G1153' => 'tar', 'TAR623G1681' => 'tar', 'TAR629G1759' => 'tar', 'TAR633G1854' => 'tar', 'TAR636G1060' => 'tar', 'THA.LOC104800563' => 'tha', 'THA.LOC104802452' => 'tha', 'THA.LOC104805068' => 'tha', 'THA.LOC104816517' => 'tha', 'THA.LOC104824538' => 'tha', 'Thecc.02G282800' => 'tca', 'Thecc.10G091400' => 'tca', 'Thecc.10G092300' => 'tca', 'Thecc.10G176800' => 'tca', 'Thhalv10000916m.g' => 'esa', 'Thhalv10010438m.g' => 'esa', 'Thhalv10010456m.g' => 'esa', 'Thhalv10021258m.g' => 'esa', 'TPR.G16104' => 'tpr', 'TPR.G27486' => 'tpr', 'TPR.G33941' => 'tpr', 'TPR.G37753' => 'tpr', 'TPR.G37803' => 'tpr', 'TWI15G0799' => 'twi', 'TWI31G0575' => 'twi', 'TWI63G1207' => 'twi', 'TWI75G1486' => 'twi', 'unitig_0.g1074' => 'ugi', 'unitig_22.g5587' => 'ugi', 'unitig_61.g26199' => 'ugi', 'unitig_748.g8778' => 'ugi', 'vmacro00410' => 'vma', 'vmacro06931' => 'vma', 'vmacro07208' => 'vma', 'vmacro07209' => 'vma', 'VMungo0251G1193' => 'vmu', 'VMungo0720G0232' => 'vmu', 'VMungo0720G1652' => 'vmu', 'VMungo1309G1288' => 'vmu', 'Zm00001eb000620' => 'zma', 'Zm00001eb061140' => 'zma', 'Zm00001eb115120' => 'zma', 'Zm00001eb163970' => 'zma', 'Zm00001eb166990' => 'zma', 'Zm00001eb302280' => 'zma', 'Zm00001eb411370' => 'zma' ) $gf_id = 'HOM05D000992' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000992' ) $data_identifier = 'HOM05D000992' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 4, 'aag' => (int) 10, 'ach' => (int) 12, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 11, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 3, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 17, 'fve' => (int) 4, 'gma' => (int) 7, 'ghi' => (int) 9, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 4, 'hma' => (int) 7, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 3, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 34, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 10, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 7, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 4, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb411370' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1